Scaffold Ga0151515_10568

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10568
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15839
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (56.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006539	Metagenome / Metatranscriptome	370	Y
F010617	Metagenome	301	N
F046377	Metagenome / Metatranscriptome	151	Y
F076089	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1056817	F010617	GAG	MADTRRRRKKYAKRRVRKSPEPLTKLDQHYIAMNEIYKAARKAGFTESCALYFVSDRATMPDWVIGDGGIIPSIDPTEEDED*
Ga0151515_1056819	F046377	GGA	MKIQIDLKAADFEQLWLNSMEWSNNDWQKQSDRFEPAPLFTWQYAYWFDNYAALKMAEGFINSLGKNYAIHSDENTGDWLMLTNYASPCHLRSKLVNA*
Ga0151515_1056820	F006539	N/A	MIETTAPWIVLYSILGYFIVWGIVATIKDNAFQAGYWKGRKDGYDMHRRITDGKIDVNNN
Ga0151515_105686	F076089	GGAG	MSYNGLTEEEYNFLVKIGQITDEPAAVKKPAAKKDEDNE*