Scaffold Ga0151515_10527

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10527
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16596
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F028461	Metagenome	191	N
F086850	Metagenome / Metatranscriptome	110	Y
F095365	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1052713	F019993	N/A	MNKQVKLLLVAGVGYLGFKAYQIYTAISKLSFAPTGINFSIIKERGAIGGTLFVDIINPTAANVRVDGFTGTVTTTNGTLVGDYKGAAMVLKPGVNNVRIAWGSRSTTTLIPLALGIVRGQYPVLKFNTVFNVKGFPIPTSFSMNTKDYAPVLK*
Ga0151515_1052716	F095365	N/A	MEKYILAAYELYRQDVKDNYLSYEQFKAAICKPSTPFWVWLAGGAAVGYALKK*
Ga0151515_1052717	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGTTGKLVADLAPIAVGLLLQGQGNTFAKEAGKGMIAQAAGSFIKSKVPALGITGDGEAYDASTMMSGLDTGVDNPMISGDGGYVAPSIGAAYYDDSSEAAY*
Ga0151515_105272	F028461	N/A	MKKQNAATLFKNPQLQESIIKQYKEAGLDFQVKHSNYNTQIIGQESIIKFIQTEHHTRVFVAYNKIVKDLKASEKTVEILQGEWSTENFDSKNGLKPCKYKSVLNLDITSAYPYCLFINKLITLDTFNYLMKLPKNERLPAIGMIAKKSVWIDYKKGKADTWDVKAGEYANIFFYVIQQITDLMAWAAEIAGDYFLFYWVDGIFLKPSIPKGLLQEITGIFAEQGYYYKYENVKDFSVIRDGEKLFINMIKNGEEKPYTMYDKNLARNFTKVLQQLENA*
Ga0151515_1052720	F023325	AGTAG	MRIISPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFTSNALVGTQYYLQPDEVLDSQNNFLTTIELVDSSTNATAPTIPTTDPLTPGQAAQGYLYICNTKREILATLPLYTLIRRLNAGKPQYLYFDDPVVWQNCFIQFESLGTAITTAHSVWLKVTYSPVEK*
Ga0151515_1052733	F086850	N/A	MEIKKIKFGLGEYSKPTPKKLRRLGDGLLLVSTIVTEETMVDKPALASVALICGVIGKFLTNFFSAE*
Ga0151515_105277	F025232	N/A	MENVNEKILADYRLIVSRLDIMKGELTELQRANSKLRKAFTELLDIYQGELDRRDSITDRSDTEYYWCEKAGILD*