Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10523 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10523 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	16717
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (46.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16717

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (46.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F006135	Metagenome / Metatranscriptome	380	N
F010688	Metagenome / Metatranscriptome	300	Y
F016254	Metagenome	248	Y
F016803	Metagenome / Metatranscriptome	244	Y
F023096	Metagenome / Metatranscriptome	211	N
F061810	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_105231	F001259	AGGAGG	MRDCAFIYVHAWNGTIRVESLDTARNIDGNPEWKHVSTVNAHVILEQILRAKGKDRNKIIKHLLT*
Ga0151515_1052317	F016254	GAGG	MTLSDATKKEAMEAAQYGMPIDRIAILCGFPSGNQTQWHRWISANPKFQLELDRARAQGELLLQRRVMSGEANWQSAGWMLERTRGYVARASLEHTGKGGKELSVSGNLLGAFGGQSK*
Ga0151515_105232	F006135	N/A	MSTHIKIENQTEVPILVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHEGDIDWLNLKAMSADDLNATFGSTYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIWRPKTLAYNGIQSTPMKSE*
Ga0151515_1052323	F016803	AGAAGG	MISFIAKLRAAWTFTRHQRWVDPLPWSKPDAITLNNFFKSDTGKKFRDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEMMADQESITGQEDDPDSATNT*
Ga0151515_1052326	F010688	N/A	MRPKTATIMVIAVSPKGHHRAIGGAPSHSACGCEEADNNAPMIAIPVEALSTDTEDGQQASPEVGDEVVLQEVRGVLKKLENGEAYVEIKSVNGMPAEYEEKSMDKEGPMDEEGMRNMVAEYDSEMES*
Ga0151515_1052329	F061810	GGA	LTSTGGGSVIPVDPPIMRRDLLQEDEFFVLQEDGTGKIVLSFGTYDRMATEQGTDLILTEASDKFILTVY*
Ga0151515_105236	F023096	N/A	MKPSSTHDLVNALNIISAQLDTPDGIPNALCAEASQRLLELVQLTSDLTAHIISNPVHHGRCNAKTKGNYCNCILARLITP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10523

Overview

Ecosystem & Geography

Associated Families

Sequences