Scaffold Ga0151515_10514

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10514
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16825
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (80.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016392	Metagenome	247	Y
F078420	Metagenome / Metatranscriptome	116	N
F086848	Metagenome	110	N
F095169	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1051414	F086848	AGGAG	MTMEKELEELISKIAPSKDIAGGFMTRDQIIQLIRKVATESALIGYANAERSTRNRMEKKLKMVEEELTIIKEQLKDAELELIATTK*
Ga0151515_1051416	F078420	AGGGGG	MKGGARAGAGRKPIQIDERRAFSLYEQGFSKLEIANRFGVPYKSLLTIFRKAGKFKPSKKRKHP*
Ga0151515_1051417	F095169	AGGA	MNWRDLTIKYVKDLLRAKTPLEMVQKELIEAQLAKLQAETSVEYSQSIVNYNEQRISRLNKRINELQEFVHE*
Ga0151515_1051420	F016392	AGGA	LNNAFDYKGQPSVWLSDEKMKRFKQGEEFAKRKQDKRDINEKNQVFIYSKALSHKK*