Scaffold Ga0151515_10484

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10484
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17340
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (77.42%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002433	Metagenome / Metatranscriptome	559	Y
F007466	Metagenome	350	Y
F011152	Metagenome	294	Y
F016529	Metagenome	246	Y
F029109	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1048413	F007466	AGG	MTQWAPVWRVKIDGTDVTDSVIANLSITSGRTNIYTQAQAGYCSITLIIFGQAALPYEINDTISIEVQDTSAVYVPIFGGSVVDISVSVSQVGSSAYTQEVTITALGALARLQKALTDGVLTQDFEGNQIETILREVLFAQWQQVSAALQWNTYDPTVQWQDAENTGLGEIDTPGNYELAQRASNRAVVYDLVAALATSGLGYLYEDAQGLISYGDSTHRTNYLATYGYTDLTANQALGQGITIKTRAGDVRNDLTIKYGTLSANEVSDTDEASIGLYGNLAQIITTTIKHSADATSQAAFYLALRAYPQPIFDSITYALTNPELDNADRDALINIFMGQPIALNDLPPNMSSGVFQGFAEGWTFKASYNQLAITLLMSPLAYSLQAMRWNDVPIVEQWNTVSPTLEWQYATIVS*
Ga0151515_1048415	F029109	GGAG	MAYKATKGQGTFRIEVEPYALNNLISTLNMLDKETQGRVRDAAQPLSKRLAGQIMMFGHSSPTPVTALVLQSITTPRDRLIRVDVGGAKKVGRKYGQRASKSGKGNKVGGTGAPAGSLLWGSEYGSHAGVDSIGRSYTNRFGAPPRASGYWLNPAVEFYTPIVAQEYISIVQGIINDLGLK*
Ga0151515_104842	F011152	AGG	MIKMHMSAADEWAIHERASHVVFATEGNLGTIQYYNKLNNYERVVEYAESIAAELCVARYFGLDFDISASQGKRNADVGKGIEVKWTAYVGGNLIVSPADRDNDVAVLVVGKSPEYFIAGWLPVSFAKRKRFKNPRQDTWWVDQSNLNPIENLTRSEYAATAI*
Ga0151515_1048425	F016529	GGAG	MRLLQFDCSICAKLYGDGRKMHGLTKGAELTLNEWFTQCSGCGAFGIKIIDDEMVAGLE*
Ga0151515_1048426	F011152	AGGA	MIKMHMSAADEWAIFNEAAKVIFEWDESRPQTPRYNMGLNNYEQVIQHAESMAAELCVARYFGLDYDLNDNKGKIRADVGKAIEVKWTAYVGGNLIIAPSDRDNDVAVLVVGKSPEYFIVGWLPVIFAKRKRFKNPRQDTWWVDQANLNPIENLSRSEYAATAI*
Ga0151515_1048430	F002433	N/A	VSVGEWTAVGALVLAVLAAIYSSMRVIVRSIMSELSPNGGSSMKDQVSRIEARLDQLILELALKK*
Ga0151515_104847	F002433	N/A	VSVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEARLDTLILKMALKK*