Scaffold Ga0151515_10479

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10479
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17455
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015857	Metagenome / Metatranscriptome	251	Y
F059652	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1047922	F015857	GGA	MQSTSYSIADIEAFASRFYQGRALLITPYAYTITFAALAAATTASQVINIAANADFMALMFHHRATSAGAAQTVSNKIAPLVRILVTDSGSNEQFTNAAVDIENYSTNGNIVNDLPYPRIVSGRSTLTVQVTSYEASVSLNLDVSIEGVLVRAYS*
Ga0151515_1047927	F059652	GAGG	MSEPVERWHLKKEIQVTHVVSTLLLVGAVFAYVSKVDQRLTIVETQLIAQREASAVQRVQLERMDAKLDRLIERSK*