Scaffold Ga0151515_10474

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10474
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17613
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F008071	Metagenome	339	Y
F010603	Metagenome / Metatranscriptome	301	Y
F025458	Metagenome / Metatranscriptome	201	Y
F039992	Metagenome / Metatranscriptome	162	N
F096882	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_104741	F096882	AGGA	MAHSRRSVKESIKAWRTFEDALKELDSFEACAKWVIDNPHICKKLSGMGLMAVMKEDLSRKKD*
Ga0151515_1047411	F000635	GGA	MTLTEIAQFAGEKVGKTDSDTVTFLKKSASLNYRRVWDFAPWRESVTSSTYSVGTNRTVTLGTNVETPLSVSYDQSEVDPIDLATIISQDADLLEETRTGTPVLYHFTGRNTSGIAQLNLYPRLATAGTETLRVVEKLKCLTRNNYIVDFPPSTDALDDELRLPHVHQVILALTHADALERERQYAKAQAVVQTANADLASMANYELSQVGGVKQITPVSLGDLMTEEITAA*
Ga0151515_1047414	F039992	GGAGG	VSLDEVSELKDRVAGVSERLARMEERQVTLYHMVERSLSNFGDLSNRVNSIEGLKTKMLLVAGGLGAIISIAWDFVKSKLINGG*
Ga0151515_1047415	F003112	N/A	MIKRIATWLTNLSLRFLMTRSEYACFKEALKFATENNTMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEIVDAVVHLAVALKYLEGRGRES*
Ga0151515_1047416	F025458	N/A	MGHKTLHHNLDGSSVFTDTRTIEEAHEENLTRIRELITAKIIEAGYDEVWQRNAGLGVLTNLEVEQGREFIANLRTAYHDYKARLLASTRDEADGIQFNLP*
Ga0151515_1047420	F010603	AGGAG	MANEFVRSQRKAKGRALRFDTQGFTNVFEITASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0151515_1047421	F004760	AGGAG	MPVYQYTDTRNGLVVELEKAVAERDKVPRYLKRFQVPARLTLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAAALRSK*
Ga0151515_104749	F008071	GAGG	MTAMEYVEASGVPESRWPNFKEWFGWYEKNNLVGVVKDGAEVVGVAIARAVDASQDVAHYKHDYNAPDAFVDLTVTSIDGKPNARSLLAMKRLLSILWDEFGPRRSLIFNRNGIRKQYDYMKFMRKAMA*