Scaffold Ga0151515_10470

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10470
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17665
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (87.18%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F018532	Metagenome / Metatranscriptome	234	N
F029418	Metagenome	188	Y
F034908	Metagenome	173	Y
F043777	Metagenome	155	Y
F049426	Metagenome	146	Y
F080877	Metagenome	114	Y
F089892	Metagenome	108	Y
F100665	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1047011	F034908	GAGG	MIKFSVVLEVSMDEAKRDEIIKWGVEPSDHVNTILAEPLREKGFVVKAYSVETEHTLYDRIKKHQDHLIQADAYNDLEQEIINRACIGGVCED*
Ga0151515_1047012	F049426	GGA	MMKTKPIYKDYDREIYMSEFTTIPKEKYRRMIISEVLGWGISVFLLLITLFR*
Ga0151515_1047014	F029418	GGAGG	MTPDEKKQNFEQDIIEVAVAEYYEYVDVHKRTRSEKDAKMFYDAMRLGVIRGINFATNQYMQSLKNFEEKKNAGD*
Ga0151515_1047016	F080877	AGGAGG	MSDIERDLDPPSPQEPIKIKSWWLSVKWEDGRIEEIALPPEFRQAGKDIENFLDEVEYEYNRDILEHQAQKYGDPDGDY*
Ga0151515_1047018	F043777	AGG	MKLINGTEIIDNSPNEKAGELAEAIYDDVIWLLDIEHLCIQDDEDGNTSDTEYGQDLFNVIYERCMAYFERETK*
Ga0151515_104702	F100665	GAGG	MASRKPYISVVSIKDRKDGACNLTLDVNQAGRELLMQAGVQKILLDNIELHSEKLSLWKKLQICWSILK*
Ga0151515_1047024	F089892	AGGA	MKTAPTQAQQRHDAIEQLRNQLRPLKAYEVMKPTAQSVNIIDGTINGHGVKFVFYYQPTKADMANAHHATKNLENNLRDGVAKRKAHLFNLVENDITECTDILTINSKDLEQLKNESEGINERE*
Ga0151515_1047035	F018532	AGGAG	MDQTLELLLSRIDDQRNQVLLNLGDGAAKDFASYQNMTGYIRGLSVAESMIKDLAQRMETFEDE*
Ga0151515_104704	F006587	GGAGG	MIDKKYDGTGFVVVGLIVGALLMWAVMEATHIQKKYKMNLKCVQGELYEEVRPNMFVKSHLECFEQRTF*
Ga0151515_104705	F012016	GGA	MEQQPYAWAIEEFNSDGELVWSSMSNFRPTELSWIRDLPSKKHNIVLTPLYKDESKAEKITGIKSYKESTQKMMEAYGGL*