Scaffold Ga0151515_10427

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151515_10427

Scaffold Ga0151515_10427

Overview

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10427 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	18698
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001298	Metagenome / Metatranscriptome	727	Y
F007416	Metagenome / Metatranscriptome	351	Y
F010765	Metagenome / Metatranscriptome	299	Y
F088512	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1042710	F088512	N/A	MGTKSIRHIVEAVLDTHLTAESGLSGVAIYTGDSAEINVLPKAVVLCDSARSPGDLPEGLGNYDCSVRITLFSNADDTTLTDHRARCAAVLGAMQDLTTLKARFVTAGDATLYDVTPGSEDEGVDERSWATAMSFNLIAVLPPA*
Ga0151515_1042724	F010765	N/A	MSALPIPPNPDEMPVGFRDVVFAITIGSLSWIVRYLCSSEKHSMGYILRRTATAGLTSLLVGLATKGYFSSEGMAFAAAGAAGYCSPEAVDAGLGWLRKQSGKGK*
Ga0151515_104273	F007416	AGG	MGKVMAQGLFIGLTEDELLLIKSKAVSLITEGKTLMSYSDSGSSASKSFSMPPKEMLSEAMFALSQLDPSTYGSRKSVVNTNWNNSII*
Ga0151515_104278	F001298	N/A	MSLYSEFLEDAKEIVNDFGVTGSCNGGAITFMCMCSEPVATQVFESGGFCDRVQHTVRIPAVTASWSLPDGSNGASAALLSSGSPIASLNIGKKIVAGGKTVRINSQTYLPGSAWIALVVMDDNQ*

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