Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10423 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10423 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18938
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (88.89%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18938

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (88.89%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009514	Metagenome	316	N
F012661	Metagenome	278	Y
F012971	Metagenome	275	Y
F014365	Metagenome	263	Y
F016392	Metagenome	247	Y
F078387	Metagenome	116	Y
F082348	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1042312	F078387	GGA	MTREEAHRILDTQKDGTRLHPVVKITQALWATGDIASPLPKHAKPFDSDGINKWLESLCVGQSERTGESLSGDLSGNQSRPSQQNENN*
Ga0151515_1042314	F012661	AGG	MASKSRKPPDAKGQVIFYTEREKAALRHIGGGSVAEGNRISIRWAAHFWNVGLRPDHNLNNVGLSLFVDDEHADDL*
Ga0151515_1042315	F014365	AGG	MKTFQIFKNVSYEYFVEAESLEDAQTKIIEEQLEANSEELIEWVFCDEHDGANWTYEPVTQS*
Ga0151515_1042321	F009514	AGG	MTNQQIKALQSIGKGIIESCNIDSIGAPSGAIYAALMGHGASLNQFNSIMDTLVKHGFLTHDSECHTYHATDSGIAWSNKIN*
Ga0151515_104233	F012971	AGGAG	MFDIEKETWMALQDLNSEDVADAICDSDAIVEAIQSSAWTDVADIIRARVELKAKRMAQVALDLPLTPWVDSEEELNLWRCYRIERQQAALEDRKVKTKINPYSKSEVNNED*
Ga0151515_104234	F016392	AGCAGG	LNNAFDYKDQPSIWLTDTKMKRFKQGEEYAKKKQDSRDINDKNQVFIYSKALSRKK*
Ga0151515_104239	F082348	GAG	MPRPPSDITGLQIQIAVRVTQALKDEFQIMGGAMWLRKLLANAIEQRKKREAEFGKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10423

Overview

Ecosystem & Geography

Associated Families

Sequences