Scaffold Ga0151515_10393

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10393
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19598
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005206	Metagenome / Metatranscriptome	408	Y
F016253	Metagenome / Metatranscriptome	248	Y
F037116	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1039319	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAVSFIPALTDWVRLITALIGLVCAIYGAYRLFRYK*
Ga0151515_1039320	F001272	GAG	MIKIELTQEQTNSLLQLIDIAIKAGGYQNAKVGVPLADIILAAAQPKSE*
Ga0151515_103933	F016253	GGAGG	MSDKIRNIIDGGTGVYSISKKEAGEIHKAAKKVKNHEVSYWTRNRKKKEAK*
Ga0151515_103936	F005206	N/A	MTFKVDRASAEVKPFAGPGEYTVTVNSCKDDGLDKNGNAVATLRYKGPSGEIISDRFVLKDTMMWRLQALISATEANIADGDEFDFSVSGAFLRFLQGFVGLSLVIVIEEERYTDKFGAEQTAFRVRRMKKVPVDLDAI*