Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10385 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10385 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	19821
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (48.39%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19821

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (48.39%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F016125	Metagenome	249	N
F016936	Metagenome / Metatranscriptome	243	Y
F024061	Metagenome / Metatranscriptome	207	N
F026503	Metagenome	197	N
F059946	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1038522	F016936	GGAGG	MTLDAIHKELVRIREALEARPYALGAPASKPAAPRSEEVPMPTEIIDDAGNVQVHFGKNKGVALSTLGDRSVAWYAQEPEPQIGNNGKPFPTRPEDVALRNAARTLIHQKRGTLPSAVAAKVIEAAAMTDSENVPF*
Ga0151515_1038524	F024061	AGGGGG	VNDGDIKNQAVINNATEQFRSLLETHFIAIARSAEESFVDDETQAEPKAKATFAIEWDALSLAPKVAVRIGWSVRYKDESESMVDPLQQKLGLVEDAK*
Ga0151515_1038529	F059946	N/A	MNKRKSDEGKRIQCDDMLAQFMPVKTIAAALRMSRGTVSERAKRAGMSRHYITEAEVRLLFRNRIGGVAK*
Ga0151515_103857	F016125	N/A	MAAVRDFDPTQINSDFSAILEQAGISFTYQGVSVTGVWSSSRDAFSEFEDQRRADSKFTVFLLTSSVSATPQVTQTLSRASITYFIERVTLDAEGAGCEIEVCKAI*
Ga0151515_103858	F026503	N/A	MIDIETSFSRLDYQLTRLALAAKVDLGLVIKEEAKYAIQTIVKFTPPKSKQQGANAVRADFSRLAEPLVFQDLQAKATEGGFYKSMARYVRNREVEKLRALFRNPNLTHYYGRPLLESEDAIKKYHRSQQNSRGRITGKPRVLAFGSDFRRVLKTMEDRVGWTVSGWNASAKVTGARYKKFSDKLKPQAGGNKLFGSVQSSFGPQPFIKATAHNVKIPNYQRMIDGAINSRIRTTAKKVAAVLANRAVNLGFTRVGGAMQIKTAA*
Ga0151515_103859	F014606	N/A	MSTRTNIRTATANALTGALVVPTANILRGRNNTIASVSFPSAAIYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFTAESGTYLIDDLFDTGSAAVEAAVLADVTLGGQCRDLHLTSVDYTIEPDEERRWGTARHTFNCIYLTTD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10385

Overview

Ecosystem & Geography

Associated Families

Sequences