Scaffold Ga0151515_10383

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10383
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19855
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002098	Metagenome / Metatranscriptome	593	Y
F005234	Metagenome / Metatranscriptome	407	Y
F007581	Metagenome	348	Y
F017559	Metagenome / Metatranscriptome	240	Y
F046241	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1038310	F007581	AGGAG	MNMEKITSMLFPVIVSAIAWMISSVTSMQNDLIDIKAKMPILISEQGVPTDSPISAEQRGKLKEEIRQQISELNVRIRILEEHDMQRRGK*
Ga0151515_1038317	F017559	AGGA	MIIDAKELSNGLIECRYETHLECANCGMEVDALEYSSGTCSDCGSDWDEKRHIAVHVTSIPLSGQTF*
Ga0151515_1038323	F002098	AGGAG	MAYKSAADGITKQGKTKGRNLGDDGAKVGIEKGPKHAGSKGGKKNIDMKTMGRNLAKVAAQKKG*
Ga0151515_1038333	F005234	AGGAG	MMQTDVKSGTAAADATTTISAGPARIKGILINYTAATTLTINDGTGGTARFTYTAPAGAANSVYVAIPGEGIRCDTNISAVASAGLTAQVFYG*
Ga0151515_103834	F046241	N/A	MKQVQIVAPEYIYTIWDVVEPMLKPAFINFDNADYGIEHIKVLIIEQLQYLFVVVEDKKIIGAFTVEVINYPNHRVAHTTSMGGKGLFNIDTVKQYEDWARLQGVTKIRAYAKDSQARLFKMKLGLNAVTHVVEKTL*