Scaffold Ga0151515_10374

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10374
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20012
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (22.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F016262	Metagenome / Metatranscriptome	248	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F026511	Metagenome / Metatranscriptome	197	N
F028461	Metagenome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1037411	F028461	N/A	MRKKQSTATYYKNPALQESIIKYYKEKKLNFVVKHSNYNTQIIGSEATLKFIQTEHPTRVFIAYNKIVKDLKESPKTVEILQGEWSTANFDSRNGLKPAFYKKILNLDISSAYPYCLWINKLISQDTFNYLMNMPKTERLPAIGMIAKKSVWITYTGGKAEEWELKEGFYTNVFFYVIQQITDLMAWAADVAGDSFLFYWVDGIFLKPTISKKKLQEITGIFAEQGYYFKYEKVENCNIVRDGDKLLINMIKNGEEKPYQMYDRNLARNFTKVLQALENA*
Ga0151515_1037416	F025232	N/A	MENVNEKILADYRLIVGRLDVMKAEVDQVNRSNWKLRKAFNELLDLYQDELSRRDSTEDSQEVAYYWCEKAGILD*
Ga0151515_1037426	F016262	N/A	MFKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTFLIGAGATGKLISDVAPIAVGLLLQGQSNLFAKEAGKGMIAQAAGTLIKSNFPTLGITGDGYSDSVMMSGTLDTGVDNPMISAVPSSYLGDETSGDSGEMDY*
Ga0151515_1037429	F023325	N/A	MRLVSPLIEYLLVSGKMKQVGSYEGSYTKSVYMPFTSNALIGTSYYMAPDTILNSTNNKITAIELVDSATNTIAPTVPVTDPLSTAQAAQGLFYFCNAKREIISYIPLYSLIRRLNAGKLQFIDSPDPISWHNCFIQFNSLTTAITTANSVWLRVTYSPVEK*
Ga0151515_1037430	F021092	AGTAG	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGIEKMRKFLSKNTGFHRIKLYTNNDLKANGIPRQEPQVFEVSITGKEFDPPREETKEITGFGVNPGYPSAGGIIGVEQYLSKHEENATLREKIKGLELELQYMRDQHTREIDRMRADHEIALKAAKDSNQMFSQGLGMLMNRMGVGE*
Ga0151515_1037435	F026511	N/A	MKTITDCQTIGESTMITSDCIAIAFKRPTGSNPVNVIGYPLAEGETLTISQNVGDFDKTQYNVVITETTPGASVCHVFRTLILE*
Ga0151515_1037441	F006345	N/A	MNNKTAKQIVNEALNMAISKGCFGLIEVTNIVKALEFLNEQPDVEFGEITEEY*