Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10365 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10365 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20211
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20211

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000346	Metagenome / Metatranscriptome	1253	Y
F005234	Metagenome / Metatranscriptome	407	Y
F026508	Metagenome	197	Y
F071958	Metagenome	121	N
F083882	Metagenome / Metatranscriptome	112	N
F094946	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_103651	F094946	GGAGG	MATFSKKIMGKEVGDAAVYATPHTMTGKVVKATDNPGSGPDHSDANTVNMSVGNINRRAQPAAKTT
Ga0151515_1036512	F005234	AGGAG	MMQTDVLSASAAAGTTTTIFAGPARIKGLTISYASSGTVVLNDGTGGTAKFSFTAPAAAGSINVVIPGEGIKCNTNISAVCAASTTAVVFYG*
Ga0151515_103652	F000346	AGGAG	MNKADLKQDKKMMAGAVHKHEKKLHPGKPMTKLAKGGKTNANMKSMGRGMAKVANQRGG*
Ga0151515_1036522	F083882	GGAG	MLENIPDVEENVPLPASATEAMPELSPKEELDMMARTAKMLSDITGQPLAPTQEHRGQAMQLAEQVIANKTDMNLAQYPNETIAYLAGMVAQYDYMVVRELADLKKYVVNKLLQETDNPDPKYRLPAVKALGEVDGVDAFKKRSEVTIKHQSIEEVENELLATLQRLEKRTVDVHARVVNDENHA*
Ga0151515_1036526	F071958	AGGA	MSKANSPVVPAEIVIKSFKDAGYQSALSGERMTNVAAFVISKCPDFLNSYSDEVGAELKSGWALRWQELHPATVYSDEWVPNPKGQHSVSLAYCLSYSQQAFGQIKTDNPVKHGVIKGIRDDFSKYVSNRMSDLKRAVRKELDKGKVRERIQAKVWTDFQTDTFDAMKARCKTALARNDATAPTEVKLRMAIDAFKTALSK*
Ga0151515_103658	F026508	AGGAG	MSPAEQQARQEMADRKMQADTDKAYSKSLTNTEYAPEKKDPRDAVRGQRGYAKGGSASARADGCCTKGKTRGTMITMKGGGYAC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10365

Overview

Ecosystem & Geography

Associated Families

Sequences