Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10357 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10357 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20521
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (78.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20521

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (78.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011143	Metagenome / Metatranscriptome	294	Y
F018168	Metagenome	236	Y
F024787	Metagenome	204	N
F027846	Metagenome / Metatranscriptome	193	N
F033425	Metagenome / Metatranscriptome	177	Y
F060861	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1035711	F011143	AGGTGG	MHKIEITKQDGKKLTYELTPSVKVAFEAEFKTGWRKRLGELQLESDLWWFAHALEKAAGKTDKPFGDDYINQYVDVDLLYEPKNG*
Ga0151515_1035718	F018168	AGGA	MKLTKKQKEIVKSYLRSLAAATLTTILALVADIRPELSVLAGALVAPLARYFDPQDKSFGINS*
Ga0151515_1035726	F027846	AGG	LVIVKWDKISGAYVDDKRKHFVKASLIREYAHKAMGATQVRGRLSAKMVEGYWLDKFKEAVKYEL*
Ga0151515_1035727	F024787	AGGA	MNYEIWGWLVTISLFTLVALLIGVTWIVAVENGYDKGYKAGYKRGVMDTKQSNVRIHPSLRENQLKQDNDYLMDRVVSLWDRENK*
Ga0151515_1035728	F060861	GGA	MKPDLSQYEDAATLNKWFINNYPMGRLDLSIYQLDLDKGIVVFKGSVWRDLNDAFPAVTNYAKGERDEFPTHMRKWYLEDTATSCIARCLVLIKGSNKTAPKESMIAATQWSVEPKTELEIDLLQPNPQSVITTQEVTNLTNALCENGVRMIYKTGISKTTNKPFAGYVCACGGQCKPIWGSQKSDGTWVFKEPVHG*
Ga0151515_1035733	F033425	GAGG	MAIVNSQATVTTTSQSIVSVDNVSRDVLLHSKHTICIGNSGVTSSNGFLLDNGDKVRLTLMEGEDLWAVATTGSGTLHILVSKID*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10357

Overview

Ecosystem & Geography

Associated Families

Sequences