Scaffold Ga0151515_10355

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10355
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20562
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003768	Metagenome	469	Y
F028157	Metagenome	192	Y
F033428	Metagenome	177	Y
F061844	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_103552	F028157	AGGA	MTTDADFLTPKFITVMGDHDGHARWVAPIDCTDVMSAYRQGGVHLLVVLDQEGNVSVAFKPGRHWEASWSPPITLERR*
Ga0151515_1035520	F003768	AGCAG	MAHFARVENGAVREVIVVSNDDAPTETAGKAFIANIGLSGEWVQTSYNNNPVEGASRGKYAGIGDIWDGTNFVTPPSGEEA*
Ga0151515_1035528	F061844	N/A	MAKYLVSGPFPVTGTEPGGFVDGTGIDNVELLIEAGILTPVEDPKKSTKADKAGDK*
Ga0151515_103557	F033428	AGAAGG	MSRLEGQLVPTVHVEKLKVRFANLSDQLKATIREIADEAHGGISLDPPTERRVGIARILLEVAEQDGHIEKDLIRSICMHRTGKQYQTAGLALLDLSWIDAERVWSTLMDIYSDRVLLEYIPASNHYIIKENTHV*