Scaffold Ga0151515_10336

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10336
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21187
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064499	Metagenome	128	Y
F065526	Metagenome	127	N
F073261	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_103361	F065526	GAG	MDEKDFVEVMPGEKKPKDPRMERMDAQFLPSLPATILVLGQCGSGKSSALWSMMTKGYVTGKTKKKSIFDEALIYIGTMDAKTSFEKMPIENKLIMTEFEPVSFDEYQTDLKKHQLERLEKGKPMMNTAIIFDDFAGASLMRKAKVGGAPPIEKLCLTSRHEANTTLFYLTQFYKNTGFTSPAVRANL
Ga0151515_1033619	F073261	N/A	MEAVLNNPQTSFLTNPRTFNEIQKQSGMSMSAMMKHIGRQSKKQKEKGPTDAEKSEMRLKEMEAANKK*
Ga0151515_1033623	F064499	N/A	MTEAHIINLADRTDRWEQMKEAWKDQPITLVRRDAIKINGTDIPDAYHAVFLKHREMLTTAKKLGEKHILIMEDDAVPCAEFGRHWTAIKEYLDARDDWELFNGGMLMIRDCVDKIVRIDHKDKKDPTMLLGVWRGAMAHFLYMRVDACLEKMAEWEADGKPMFDGWYSHKLKTIASIPYLAYQRDGYSDAAGQVRSWEERFKYEEDTMKFALREFMEPQKEKPDFDHADPRQTVLREIDRTSGGFEPPKGPIWDGHGYS*