Scaffold Ga0151515_10306

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10306
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22407
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (64.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F023058	Metagenome	211	N
F033421	Metagenome	177	N
F053133	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1030618	F013988	AGGAGG	MAAYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITGVDATFNGNYIVYALPQYAFMGVDDEGDLLFDPAVSIPNQVLYAKTASDVARTASSGTLTLTQTCTWVTAAMLEDWLGIGTATAGDAAFLTICASACSQFAWRRRMEAGYIDSLTTVPSQDVLLGTQMYGGALYRQRGSVDQFASFQNMGVTPVSGLNGIVRQLLGIDRPQVA*
Ga0151515_1030622	F033421	AGAAGG	MADGIEARIEVYGLKEALKELNKIDKSLRREITKDYKRITAGLVSDIESAIPLNYPLSGWQRRWTLRGSYEVFPWPTEHKVKAYINTKPPKEFRSNTVNLTTFAIKWIGAAASFFDFSTSNAMGEHLTAKYGDASRVVWRQYEAHKEDLNSAMEQLVDRVGAATSRDLKAE*
Ga0151515_1030624	F023058	N/A	MAGVAVVASGNYDLEIDTGYMWDAFTLDDDLKGELNNTEYVLNGVSQYASVMDGTIALTAKRGRQNTGDQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANDQPGLAPLRQVRFSRYDSLNVKKYLWVGYIVNYDYAFTLGGLDTVTVNCADFSYQLGQTFLAEWNVIEELSSTRFGNLLDLPEVAYTGTRSIETGVATLGGAAAWTVANGTSVAAYANKINEAEQGRIFVDREGTITFQKRLGTTLGIPIAEFHDDGTNIGYSAIDISFQADTVVNRASIQHAGATSPQVAEDLVSQAAYLVQTQSITDSLLHNDAAALTLAQYLINPDPEARFNFLGTEFPGTPALDQDTLALLDVGDLINIQKSITTSAGPTQFAQNLTIEGLEHRLTLSAGHAVTYYTAPTTIVYELILNDLVYGTLDTENVLG*
Ga0151515_1030630	F000722	N/A	LDTLESSEVTEEPYPETGITQETRQMYPENYSDKYNKVFKEFVDDIMKPPRHPVDRLEDHSILIDELTLMYDAHITIGGEQNRFNASVIRAAINVIIACTK*
Ga0151515_1030631	F011919	N/A	MDAFGLQSMQESETNKMSDLQLFTPSRGLGQYRENIAIDRNTVIISSSAKPTSVNAALNALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTLAGNMAIVWKAR*
Ga0151515_1030633	F053133	AGGA	MMNPSEHYDRLHDHMMAIARERDWLKTEVDRLTDELYLAHEALKREFVDKGIMKAIAE*