Scaffold Ga0151515_10269

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10269
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24211
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (41.86%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F003687	Metagenome / Metatranscriptome	473	Y
F029405	Metagenome / Metatranscriptome	188	Y
F051883	Metagenome / Metatranscriptome	143	Y
F055681	Metagenome / Metatranscriptome	138	N
F077223	Metagenome / Metatranscriptome	117	N
F089995	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1026911	F001190	N/A	MTSTPAGQDTGDDYFDINKFEQLLNRLEASKGRQQRQKSLEGRRDIFATGLGSMMSNF*
Ga0151515_1026921	F001806	GGA	MDAGVRQKRIEALEKIKEHALTRAKEGADSFEVRDFVTSAKKELAYELPDEEAFKKAVRATQAYQGSKAN*
Ga0151515_1026927	F003687	AGGA	MSPSSVEHLLTQKVRLLARRESPAIDKELEDLRQAALEVFFQWQDGLVQFQDLTPFVAILEKKVDLNRSLLKWEQQHIS*
Ga0151515_1026928	F051883	N/A	MNYPDLQHLTLVGRIAALTVITTEDDRECLVVTLYHRITTDTTITVKFLNSNGLLTAHTNNNLVIGQELTVTGKLTGIRAFYMKDDVLTPLKQPEFQMKVIDYAFGSKPQPKTQPEPTPTAEPALEPVAF*
Ga0151515_1026933	F029405	N/A	MNFIDEQRNADMLDALADIAYEQEQAMRESEQSEWDGIDEISDAERNACDHYNERYIYSYSYP*
Ga0151515_1026936	F089995	N/A	MQMVAKMKESADKHGVGFVGGFISPDGKKFMMTNMSQEDTQFLLPDDLK*
Ga0151515_1026939	F055681	N/A	MIGFSLEFKRWYVVVRGPKGRVYSAFGFAKQMPVFTPAKTMTLQEYIDDYNDAIVFTDQDGEELMRI*
Ga0151515_1026941	F003601	AGGA	MTEHTDEQLLAMAMANLGEYIHDNSPHYILIEKDPRNDEDYDTWEVGMEPLPGDHTWRSTSIDVAVSPIEPTD*
Ga0151515_1026942	F077223	N/A	MTFLAAFKHLIPNFHAYSDDERRYNIGATWTAADGLQDYHNLEVRYVRNSEQLALQGVPQPDGSWKYVEPNGCVHTMSAERAQSFMQQTHEHANIMCTMLDRLREAGLMENIVDTEAQAV