Scaffold Ga0151515_10239

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10239
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25621
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (70.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F020354	Metagenome	224	Y
F021759	Metagenome	217	N
F048279	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1023928	F020354	AGAAG	MFTKLKDELFALGFTLGASAITIMTLSGTVQNWALFFTFLSLALHLAGVLTKDGE*
Ga0151515_102393	F048279	AGGAG	MMIVILEMVAVFLIALGIFYIAVPLGLIFVGLSMLAFTLAWERSKKADRN*
Ga0151515_1023931	F021759	AGAAGG	MDAGLATVLAAAVATFGGMIIAIMQLKGFRQENREDHAVVQKRLDNLIDMVGKQGAKLTSHLDWHLTTKEPSKDPKVKQVATRKKK*
Ga0151515_1023933	F005528	AGGA	MRILTAILATLTSLTISLGIAQAVSAPTHTSVAVIALQPLWQPPVADRLDPIQPIRYRHGDVSWLPSLAKQAGWPDHTIGKLTQIVLRESGGCPNRRGGDIVDKDCNITGVSEWNHRSDTGLLQINGVNYDMSRNKWAAVCRQLNICTQDPLLDPLTNLKAGLVLYNLSGFEPWNPCNWRKCKVSTTSVP*