Scaffold Ga0151515_10207

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10207
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26958
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (63.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F009750	Metagenome	313	Y
F010398	Metagenome	304	Y
F019834	Metagenome	227	N
F070110	Metagenome	123	N
F093841	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1020717	F009750	N/A	MKEIIEAICQNGTFKHNKIYRPHLTDRLGLALKYPEGSECIIWTNGKKYYAVCEAFGAIFTINIPQNLGDNIWAAFKTQYEGNYVYQDI*
Ga0151515_1020719	F001561	GGAG	MQTREQKLVYLKKTIETLWHGVSDTKTGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPKSTHHSLISVCDKAGDKIRAIGYCKMTLARFPNDPYAKSKLQSLSQQ*
Ga0151515_102073	F070110	N/A	MTFNINLWYIVMMILDDFPIVIWFIHKKKNRYYLYDSINQLVMIRDEKRKKELYDYCENNGIDVQEEF*
Ga0151515_1020742	F002398	GAG	MIPALSIFLLTSVDPVKNFVSLKAYISENAKVHCQVYFINEDIPDFPRVNLIEKNKHDFFEYLDTIGIEHSKVGSYYFFNRKNK*
Ga0151515_1020743	F093841	GAG	MPTLKIEKFIYMSGGFYVYKMEDGYAVKDQFGYTLKSAKTVKTCDTYVQKQLETRRVAERYAIEKINQDHQEHKEF*
Ga0151515_1020744	F019834	GAGG	MKELKFTITGTIFVPDNVEYEYNFEDQIYSFSIGDKKFELIAALEATDSNGNQYVIKDEDFKSHDIGFFEYEDAYFED*
Ga0151515_1020745	F002406	AGGA	MENLKWIRAMCDRLRDELSSEYDDETKDLIIRAFMNGLFQNPAIVEELKSSSLIESDYFEDEE*
Ga0151515_1020748	F006182	N/A	MKTLQFNVTGTLEVPDDVIYHHDVAGKLYAIEFNGIMYMLQVCFIAEGGAWGYETITDYDAMENHSIKNVRYDDAEFDIIK*
Ga0151515_102076	F010398	AGGAG	MEISIEGSVEVNYHLMIDEDVFNDCCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNAAEIDYTEIHEESTVYADTLTISENYKMTTVYYGENRKLESIEIE*