Scaffold Ga0151515_10185

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10185
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29018
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (80.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F017817	Metagenome / Metatranscriptome	238	N
F088508	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1018531	F000961	AGAAGG	MATPEIDLVKYGVLWQKVQDYERRFDDMDKKMDKMEDQLAHLVALANQGRGGFWAGMALVSAISSVIGYFSNFFHK*
Ga0151515_1018535	F017817	N/A	MSKKAKGINPELEKALNELLKQVMADPTATITDKMRVADRALKLEALKLKDSDGDWGAGFMDVDDDEDK*
Ga0151515_101859	F088508	AGG	MLKIKPQDLNPTTRRYPRTLQEAFPKDDWESVDKTVYKVNPDDWIALIALFGLGFLLGLLIGEL*