Scaffold Ga0151515_10180

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10180
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29783
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032276	Metagenome / Metatranscriptome	180	N
F036694	Metagenome	169	N
F048308	Metagenome	148	N
F052596	Metagenome	142	N
F067741	Metagenome	125	N
F076085	Metagenome	118	N
F096881	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1018017	F096881	N/A	MAITILSKPTDALYYGYVPCYNNQWFVASSSQTASANFKYYIVVTDLLSGYSVTEKFLPNPSGKLQFDASKFSELLMTNYIPVNQYGFQQNTSIRKIRVNIGEIYGSTLPGTIYSGTDIDYNVWNGSLELLTFSQYNSKNYTWDLNTNPNLNYPNLLSDLADDYTFNNRSNFLYWMVLEGQTDLPKIYLRTYNAAGTVLNTYTITNSYNALTSPSVGYYRNNMVCIDVGKKGIDGINASYLVGVEYYDIMAEVAAELAPFKIKRYTIKCSPRFDVYTLHYLSNTGAYETLHCSKVSELNSTKTSTTFKRSPWTNVSNVMTLDYSVAVEQPTIVNVQNGLKLNSDWITKAELIKYKDLFSSPDVKLDLGTAQGYASVKVTNGTYVSKNNDKLKNLTFDLLFTHNNQRQKG*
Ga0151515_1018019	F032276	N/A	MIPTNVNNLTIKEFIEYENIRTSSLENIDKIIQIASSFTNVSVSEYENMSFNELEKVKHKVLLLINSTPNTRLKNTFWHDGVRYKACKDERDFKTNQYTALKQYETDVINNLHKILALIYVKCPVFSKYKFNSDNVEEIGDVIYNYGKVGDVYGTLFFYSNRSEKLKADLLNSLEEVNREIAIHMEEVNKELKASGVNMDGIL*
Ga0151515_1018023	F036694	AGG	MLHELYFKLLAEKPESIDKYNKDGKLYILGLYRLRDLFRNRTRTLQHIDGNTSSLHEMSNYEIRDFAEEPIELLPIDEINIERIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARLKLKNQLK*
Ga0151515_1018024	F076085	N/A	MNNLLSVSEFATLHSVSHQAIYYKIKTNQIKYIIIGKTKFIEKGSKYKRRAKNNCFDNQIVSNKSKNKH*
Ga0151515_1018025	F067741	N/A	MKKFKIEFLDSDKCIAFTKFTKWETIEDCRLYAYVVMMNKVETIQTFNITAI*
Ga0151515_1018028	F048308	N/A	MPTNEPFSSKSMMYIELDIEQLNRLQMFNDRLKLHIDNLPRNSTGKRSRYFEQVKVMELFIQQNIKKFI*
Ga0151515_1018046	F052596	N/A	MNYEKFKQIIDLQIAHNKRVDELYAMKIDTVEFFNELGRANDLLWTEVLTENGDYHLCYYLYEMNGMYGTPDLNEEYKNIKELYDYLIENKGFK*