Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10164 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10164 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	31224
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (87.76%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31224

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (87.76%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F010680	Metagenome / Metatranscriptome	300	Y
F016263	Metagenome / Metatranscriptome	248	Y
F020162	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1016420	F010680	GGAGG	VCALIAVERWLVKFGSEDRPNYATGKRFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKARKNISDVGDLEVRTIRTQSAIPFWKKDAGRTIVGAKVLDDEYYSLVEIYGKFQADDYMNDEFADPSIEGWRVPIERLEV*
Ga0151515_1016424	F005146	AGAAGG	MKLINFYEVMDRKGDIAWGGASVTDAVEWFRRGLDNSIFVSVWDETTEDPVLVTDKIEVTALVLATITSEREKAR*
Ga0151515_1016426	F002827	GGA	MNKEYYQAKADLCRDLAVKQMVEGDSKRAGENLIRMVNALNELNLINYREEKGNE*
Ga0151515_1016428	F016263	AGGAGG	MPKCGVCGWNFSDRTLTKHAETACGVEDSKAEARPYAPEIDDLIKQIEEEKGNE*
Ga0151515_1016440	F020162	AGAAGG	LKGQSVDEDKDYVPRSVTFADFLVVISGFAVNIVRAIEMLTSELLDLAVYNANRKTKVSKVWEQFTSDLEKMEDNNG*
Ga0151515_101647	F000368	AGGAG	MDKKYKAMAASWFRAAASAAVALYLAGETDPKKLGTAALAGFLGPVLKWLDPKATEFGRGSKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10164

Overview

Ecosystem & Geography

Associated Families

Sequences