Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10162 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10162 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	31720
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (71.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

31720

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (71.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015703	Metagenome / Metatranscriptome	252	Y
F036141	Metagenome / Metatranscriptome	170	Y
F048791	Metagenome / Metatranscriptome	147	Y
F057907	Metagenome / Metatranscriptome	135	Y
F074495	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1016211	F015703	N/A	LFEVKYDMYRNGRMVVEVQQNPGRKGWKPSGLATTKAKWFIYVFSPQAFIAVEVDRLKRYLEINNEIELKEFVPNSNNPTKGYLLYPEDINKLLSSELYDANVVFDKQ*
Ga0151515_1016227	F048791	AGGAG	MAIPFQNANLTLTQMRQLVGELSDLDIGNISENADISTDLVNGFIKEGFQKIVALSQRWPYYQSTSSFATVNNIRGYSSFTQTIPTVGSKTIDDFYQIIALVNNGPASGNNGQGNALIYLDQARCESIWVGSQDQANIPAYFSIWGGQINLWPKPNDVYTITIRAYRIPLLTWFSDENTSIDIDPEMQLPLINYVMARIFQFQEDTEMSNEYMRSFEKAVAIIQGQLTAPSSNRQLIMSGGLQLTPYDWWWSDSSNMRVLPGSPNPLGVAF*
Ga0151515_1016228	F074495	AGGAG	MNKQTQGAGQGLAGTEPYGTVDGARHIGNGRADYHGTGVEIAPPSGIPYGGVHYKSGLCQAMNKKEEECKAPKAKGTDYCVGHLNALKKIGENQDAALDPKE*
Ga0151515_1016241	F036141	N/A	MEWIVPIAVALIGGPLVVVVQKLRDENTSQHAEARDLLHKVVNKVDKVDEKLDNHIEWHLTKPRRKKSES*
Ga0151515_1016242	F057907	AGTAGG	MQCSICGADLVTEQDQKRGICFRCHIKGIKFGFRSVEYGQKAWNKSTIRETQKMYEAMPGVEKISTRKELI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10162

Overview

Ecosystem & Geography

Associated Families

Sequences