Scaffold Ga0151515_10144

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10144
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32909
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (46.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006658	Metagenome / Metatranscriptome	367	Y
F015864	Metagenome / Metatranscriptome	251	Y
F018714	Metagenome	233	Y
F038671	Metagenome / Metatranscriptome	165	Y
F044304	Metagenome / Metatranscriptome	154	Y
F051884	Metagenome	143	N
F088307	Metagenome / Metatranscriptome	109	N
F093779	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1014420	F051884	GAG	MTDPKDDAPWLDCMDGFDEEQILKVLKSQRQAQKLLDAAHRVADSEVPLGKLIRLGHKDPMSVRVRYEYGAILLALVEECAYKKDELYLVNVRDILDIIEVLNNGC*
Ga0151515_1014422	F088307	AGG	MTEIQELQENEKVLDKSAFKVSQILRIFVEGIDKAKFVYMYSLLYNQIGQGPDGKPCEEGDENMRHWLNTYNTHLGFCPADELVNKMPEIIEYLESFL*
Ga0151515_1014425	F018714	GAG	MTDFEYQKTLLIGAIIGCCFTILAFYMMKPSSQNHTVTPKTNFAVVDRYEDRCDVVQWSDNQMATYKYFLDCSK*
Ga0151515_1014436	F044304	N/A	MTTLDTTQLCLTDRQTSIINIALTNLYDEIAMGGEGKKMRDDIMELSKYIQKQYEYYHD*
Ga0151515_1014441	F093779	GGA	MKVEITQDITGTGNYHWILYTGPEHIDEYTGYCYTLGECFELIVKWETLNAQKYYGGTVND*
Ga0151515_1014450	F006658	AGGAGG	MDNKSKEPFGFNEVSTGELIDSPKFQEQQSKKNTLLESLNSPEMVKLREDLAKAHKDSIEKSVGWYHMLSAEDKYRAVEAFCYIICKAEREGTSHRGLMSELDVYPEAFWIDDLMTIHNALYVEYQEQDSRNWKEVKKDMKTLEDIVDK*
Ga0151515_1014476	F015864	N/A	MTYSTDTELFEFLYAKCRQDSDLLAMIVDEYVVSLSDSKLIELKDFLTNNFGDN*
Ga0151515_1014477	F038671	GGAG	MKLTTQTVQEFFTETEWDMIYNFIGNALDNDDYECEDVYAIRAKIHDLFLPQ*