NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151515_10135

Scaffold Ga0151515_10135


Overview

Basic Information
Taxon OID3300011114 Open in IMG/M
Scaffold IDGa0151515_10135 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)33965
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (66.07%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F000324Metagenome / Metatranscriptome1299Y
F005737Metagenome391Y
F008183Metagenome / Metatranscriptome337Y
F069850Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0151515_1013531F069850AGGAGMVISQISNTAQVATFVNVFYGISSLVTQTKKGYAVTLLDTDAEMIVATRIYSATMLDQAVAYAKKIADVQE*
Ga0151515_1013533F005737AGGAMFEIEKYSKPTDWAQVALWIVSITAIVVVALDVFIWRP*
Ga0151515_101354F000324N/AMISAGPKHVLAYDGVMMNIYHCNKGQGLLRHEHPFAHLTMCHAGSCIIRKENRELVMTKDTQPVNLTANEWHELEALEDGTVFVNVFAQSKM*
Ga0151515_1013546F000220GGAGVSAEQLSLVDKVLAYVSSPFRLFAMVLMAVLTFAGYFVYTNQELLIGAYKESKKIPSIAEDRVEDAAAHLFKQSGALVVAVFKVNSMFGTRVLYRAYGKNGRDKTNDGLDVGLFTQNAANNADVVKLMANEIPCGEYRSAQSEMGLWYISKGVAYTCRISVPPEPGRFVGQITVGWAAEPEDMDSTRAMLQIAATMLSRSKQ*
Ga0151515_1013548F008183N/AMEVDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGFWFGMTFVSGMSAVVGYLLNNWKH*
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