Scaffold Ga0151515_10130

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10130
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 34302
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044971	Metagenome	153	Y
F055536	Metagenome	138	Y
F074554	Metagenome	119	Y
F102805	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1013010	F074554	N/A	MAVKLTNSKGKLNWGLMAGGILGTVVPVLVTAITGGLGAVTIPMWVALASGASALAAGNVELKTPVERALDADAAKVKSDGE*
Ga0151515_1013021	F055536	AGGA	MTIPSTAYGPQIVADQAKALVLANWSAVCTAAWQKAMGAPNLPAPVSANVFTSLRTLFTAESQPAIGLSVASSSANITDALGAMDQLHELQITVCSDWGYYDGFGVAQPLVSASPGDPAIEFTAEVYETALRAYVEGIVMILCSATYGFINLDLRNGSTPGWQGTGIYNASPYTGVAPQDFVVGMDDTGQSLIQQTVRASIQVYQRRSLAG*
Ga0151515_101308	F102805	GGA	MIEQDPTITLSEALARAAVAEAEVERLNRGIAIEIAAADRRASRKLSILRLIFMGIAALMGYLGALTLINWYIPGSTDKDGIGVSYFQMSKDILLVMTGILGSAMANVFDAGGRSAGSAGERMAPHTEQPPV*
Ga0151515_101309	F044971	N/A	MASDSRSSVETMASKAVVGLPTMWRIVTVIGSVASTIVLIFASFAFNLVREEWKELRAEVKEMRNRLEEMPDAATLNRLADDVQDLGRRVDRIENQVNNWDE*