Scaffold Ga0151515_10111

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10111
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35647
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (68.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F025282	Metagenome	202	Y
F025978	Metagenome	199	Y
F071151	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1011115	F025978	GGAG	VVTKKLKSLAITQPTMPSFPADRFEVFKNAVMVELVNRKNTHDAMWGIDRLVWLVDSELREKVWLQLERVWQAQEQRDDQKLDKAVRGMCKAYDAMEAWAAANGVSELPDLGQIEHQREDGTVFVIVPDDISKRIYCQQCQGSTDRDVWTAAEIAIIVKKQAGGQLGEIKRLWPESKLVAVGGPSGFDDMVNDLDMSKPSTLPKLFDTKAFKGAK*
Ga0151515_1011125	F006696	GGAG	MKFLKFLKDYWRDLTPAEVITKELAQAHLDRLEAEGAVEYAQAVLDLNLARIDRLNTRLGEYK*
Ga0151515_1011126	F071151	GGAG	MNCCNANGDCTQGRDCPVRKQRIKEINDAYINGYNDAHLGDPLDDLADTFKGLVVWLGLALGVWIVCLLLWGK*
Ga0151515_1011145	F025282	AGGAG	MIYLAAVCHDIKSNTLEATWLEETETELKRVKCRNYSAEQKDEFLADCGADGEKYTTMAGW*