Scaffold Ga0151515_10084

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10084
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38419
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (75.00%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F010603	Metagenome / Metatranscriptome	301	Y
F020886	Metagenome / Metatranscriptome	221	N
F043233	Metagenome / Metatranscriptome	156	N
F065530	Metagenome / Metatranscriptome	127	Y
F074558	Metagenome / Metatranscriptome	119	Y
F085343	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1008415	F003962	AGG	LKVAHQFITLLQQENAKLHGVVRLLGGLVDDMEANCSYEVFEAQWEGLTNYVKGLSEFFSTHQKALQSLQEACPAVWDQDEVDET*
Ga0151515_100842	F001459	N/A	MRKLKAALAFIRDQEWINEPKWVDEDEKAWTGFLSTPTGKKLSLILLNLTLRQNASAVMKKHDVLADACGYAKGFRGCVATLESLASQKLNSAVPGYGDGSDEPVAE*
Ga0151515_1008429	F003304	GGA	MEGRKMKKALVTQAFGDEWKKILDLTRPRMEAYCQRHKIDFIALEKPLTEPVQYTKSAIGNIMATKGYDQVTFVDSDVLITKDCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGAFGAIIDPRFYVNTGVFVISSKAVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVELHFGLDRYKDAMCIHYAGQSNDLTRLSNQIKADDAKLVELGR*
Ga0151515_1008431	F002009	N/A	MEKMTAPTIAEMGDEAAAITWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRCLFTLAQIRKEVTRL*
Ga0151515_1008436	F007467	N/A	MTDLEAWNKFEDGLKNVTSMEEAIAWVKKNQKIVEKLTIRAMIRKFNDDISKSNKAWRN*
Ga0151515_1008438	F085343	N/A	MALFKVQSFYMKAITMIAVTAMLMASVMAEDDETEMNDFVAGVYHGGGSVHRAGNVLMTEEGLIFKSGSRFIYQDGRVCQHVGSTYIREDNSVVVRAGNAFVSNDGLTEKVASCYIGPVNSFTAGSTTVRQGWATR*
Ga0151515_1008441	F074558	AGG	MPAITQAAKDYDAALQQMASNKAIKSDLELQKLQFDLAKARDEQEMSSPSGRSTKAAEIAATLEQDKQKQFGIPIQEGMAQRMTSAGGPGILDATRMQGELDVSGKVAEARKAALMNFAAGEKSLLPNASVDVGGVKQTVLAPEAGKTGADIYGQIYRSQVPRLAETYIAEGYDRDTAVRMASADIRKELVKASTGGKVVLPVGDGGTISYSNEEAERKWRDPQTPKGIKMQLNSIFGQQEEPKAASWIKTRLGR*
Ga0151515_1008450	F020886	GGAGG	VSLDEVADLRDRVANVSERLVRMEERQMTLYSMIERSLAFHGDTANRLSALETLKTKVLAVAGVVGLACSMAWDVLKHRFNG*
Ga0151515_1008456	F010603	AGGAG	MATEFMRNTRKAKNKALRFDSASFANVFEITASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0151515_1008457	F004760	AGGA	MPIYEYEDTRNGKVVELEKTVAERDLVPRYLKRFTVPRKLTLVGVGEPLDNPLGVNETNLMKGYYRQEQKLGSRFKSKYTPDSIKRATLRRK*
Ga0151515_100846	F065530	N/A	VIGAILQIIASVLRLIPGWREKRVDKNATEWKNNREAIDRELGSVAWWVRDNKSDNEHIGGS*
Ga0151515_1008460	F043233	N/A	AVGIAKVKLQAETASELKKKVAEYESELAQLRKATTPGSGQPTGPAKTKAFHELSLDEQERELMKMAGEVDRNG*