Scaffold Ga0151515_10083

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10083
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38513
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (74.19%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F003112	Metagenome / Metatranscriptome	506	N
F010603	Metagenome / Metatranscriptome	301	Y
F037622	Metagenome	167	N
F039992	Metagenome / Metatranscriptome	162	N
F053126	Metagenome / Metatranscriptome	141	Y
F060708	Metagenome / Metatranscriptome	132	N
F065530	Metagenome / Metatranscriptome	127	Y
F081071	Metagenome / Metatranscriptome	114	Y
F086661	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_100831	F060708	N/A	VPRYLKRFSVPQKLTLVGVGEPRENPEGVNMTNLMKGYYSQEQKLGSRFKSQYTPDKIKRAAALQRSKQNG*
Ga0151515_1008313	F000635	GAGG	MTLSEIATFAGEKIGKTDADTVTFLKKSASLNYRRVWNFAPWRESVTSSTYSVGTSRTITLGTNVETPLSVAYDLNEVTPIDLATIVSQDADLLEETRTGTPQVYHFTGRNTSGVAQLDLYPRLETAGTETLRVIEKLKCITRNNWVVDFPPSTDALDDELRLPHVHQVVLSLTHADALERERQYAKAAQIVQTANADLAAMANYELSQVGGIKQITPVGLGDLSIEEITAA*
Ga0151515_1008315	F081071	AGAAG	MSAVEFIEASGVPESMWPNFREWFNWHQERGLVGVAKDGDEVAGVAVARCICLGQEAEHYEHSENGDTVFVDLTVTSLGGKTNASSRKALKCLLSILWDRFGPRRRITFKRNGIYKEYDYYKFMRKALN*
Ga0151515_100832	F010603	AGGAG	MANEFQRSPIKAKGKAVRINSQGFANVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHS*
Ga0151515_1008346	F037622	AGGAG	MTKEQIVKEYLAGIGRKGGSVKGPSKARKLSREHYQMVAQRQRERWDSWRKERERQDKRYFSVR*
Ga0151515_1008352	F053126	N/A	VSESPGTAPKAKNGKHQFTPEIEAKILDACGSGFTIEKAGALVGVNPSTIRTWCQRKPKFAEKVETARKNHELSLLKSVEQAGEKSWQAKAWILERTYSYAQPSARLQVSGDVQHTATGGFAQLLAGLASRRAEKKAQVIEAQEVKALPDPKDKYNSYCATDNLQPIVTTTPKNPGKPRPLRMRKRKPRQESLKKWPLHDTPPATPPATDSTRNTPLNNCDTKQKEDHAQETSQGSAEGS
Ga0151515_1008355	F065530	N/A	VIGAILNIIASILRLIPGWKEKRVDRLEGDWKNNRDAIDRDLGPQPWWMRHNDPDNEYDRGR*
Ga0151515_1008358	F001459	N/A	MINKLKALICFCRNYNWVNEPAWLEEDEKAWTAFLGTPTGKKLSLILLNLTLRHNASAVMKNGDRLAEACGWAKGYRGCVATLESLATAKLNSAIPGYGDDADEPVAD*
Ga0151515_100836	F086661	GGAG	MKTVVSKIDGTVEIFDDRTLSQAKAEGIEFLREITTQYIDQTCPQSTQQNAALGIYEPARCEAIKNYIAACRNEYLRCKGLILAATSNDEADAVQFIPPSAPENL*
Ga0151515_100837	F003112	GGAG	MCKRLAIWLTSLSLRFLMTRAEYDCFREALKFATENNLMAKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTEAVVHLAVALKYLEGRGRES*
Ga0151515_100838	F039992	GGAGG	VSLDEVHDLRAKIEDVDRRLIRIEERQVTLYKMIETALASFGDLANRVTALEHLKTKMLLVAGAIGAIVSLAWDALKSRFSGG*