Scaffold Ga0151515

Basic Information
Taxon OID	3300011114 Open in IMG/M
Scaffold ID	Ga0151515_10081 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011114 Open in IMG/M

Scaffold ID

Ga0151515_10081 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	38731
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (42.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

38731

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (42.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F001806	Metagenome / Metatranscriptome	631	Y
F027508	Metagenome / Metatranscriptome	194	Y
F067679	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1008139	F027508	GAG	MAPEIIAPYANNALTDTEKADAGTEFDINRFEALLNRLEASKGRQQRQKSVEGRRDIFSQGLAGMMSNF*
Ga0151515_100814	F000973	N/A	MYTGIPKGLQDIVAELKGIKHILASMWHSRYQEGETDQLNPEAYTDEYISTEECGRRLGISDQTVRNWISIGKNNPSKGWVEGLHYVNASPNPGKKALLRIPWNTLVRSFAKNKKVDQADLRDNLPSMYCTTTAEKVMENGTPL*
Ga0151515_1008145	F067679	N/A	MAVPGRPEQAQTFLRRAADAYNSAMHSVGDLMPTKIKKGFQSGVELMTPESRREITDEQGNRILSSISNYSTFSPNFKKELKNVKGISFNETPQEFIGAYAARLLTDAGTDSTRHLYWRYNHPMAIADKLIEKAAGPAYKQFNPTQKGLVGLAISAPTVASLGQIDITNPLEQFRSKGFAQTYAEEGAEDRRETGQPGTELLERLLLGRQGRPLKYETAKEDIPSLTPERYSNYMKNYYQDKGITGLGLIKGTMENLEGVPEARIVGFPIGLQAAGALAGGAMALRGALQTRPPVVTTKERRVISYPGGSSRVVEQDVNTRVPMATRKTASIALAGSLAGALVGNLTNQAIASLNNHPENLPSTNEYR*
Ga0151515_1008150	F001806	N/A	MGAIVKEQSICARMDDETRLKRVEALETIKNKALEKAQRGEDSLEVRDFVTSAKKELAYELPDEDAFRKAMNATLAYKAKKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151515_10081

Overview

Ecosystem & Geography

Associated Families

Sequences