Scaffold Ga0151515_10079

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10079
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 38875
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007860	Metagenome / Metatranscriptome	343	Y
F038989	Metagenome / Metatranscriptome	164	Y
F076816	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1007926	F007860	AGGAG	MKSNYLASLYFISGYATSMFMMFQGQENYIVLGGITLFFYLTFSLTEALEDLNL*
Ga0151515_1007936	F038989	N/A	MSKDKSVKTTVEQEKITADKLAFNNKAVEAIAKNAAERDALRKKNKEENAALYARRRASRDTGSAGRTRLVGLSTLNRPFQGDGLSS*
Ga0151515_1007944	F076816	N/A	MIGKKFGSIYSLMNDGLTVKDGRLINNRPDGKNGIEKAAELRKAIKRAEKIEMISEGVALGNMKEDMMQGGMDMMMNFKGRK*