Scaffold Ga0151515_10073

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10073
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 39544
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (88.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F002386	Metagenome / Metatranscriptome	565	Y
F059699	Metagenome	133	Y
F097185	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1007311	F000843	N/A	MPSIWPLAAPLLQKAIDLDPSAITIEQVEYGIRTGAYYLLVWEEPEEGITGAVTISFQDLPMHRIAHAHLMGGKSIVRKHVFESAMQWMRLHGATKAQCWCQDNLVPMYEKMGMTNTHKVMRIEL*
Ga0151515_1007334	F097185	AGGGGG	MNKERSAYLHIITLPFVISAAFEFLPAWLYWPIAVICGIAWFGAFVNLSEVNHD*
Ga0151515_1007351	F002386	AGGAG	MKFAYIPKGDYRIGQVLQVHGKPMRVESFSYTGKNFRATTLEGAPDFERIVCICTDEQPIEEKRND*
Ga0151515_100739	F059699	GGA	MSNPLIRAPRLASPTPEYDQQYMEALLSNLRLYFNQLDNPGSILASTQDVAGKITTALSFSQPGTTAGTLRISLPTQVDQAAGKLKTGDVYYDTTTFVLKVAP*