Scaffold Ga0151515_10066

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10066
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 41240
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (25.42%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F011668	Metagenome / Metatranscriptome	288	Y
F014249	Metagenome / Metatranscriptome	264	Y
F014504	Metagenome / Metatranscriptome	262	N
F019318	Metagenome / Metatranscriptome	230	N
F025459	Metagenome	201	N
F035667	Metagenome	171	N
F046247	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1006611	F019318	GAGG	MLASLLIATQGLLPSPTPLSIGVQGLLYVSVVPPIAPTDLPGGGGRGREERKVTIKVRGNRLIFSVANVEVCAGSRIQVAGSSCFSNAGEAGLSISTKTTVLGSRNHAGVSRAGLSISSTFNVIGCEEENELEVYLMAQAAMALMDD*
Ga0151515_1006616	F014249	N/A	MAMNKTFFGLPLATLQELQGDFTACLKAIAIAGASYSIAGRSFTRANLAEVAQTIKELQAAIDNASGSRIRRFTPTFPTQRP*
Ga0151515_1006622	F006936	N/A	MEPNEITALTLPVIEQEIRAAYTEANALAVTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDQDKAAKAIHLARNRDQLELDLWPADMAKLGAQMLGILPPPGSAGREENDPERTTGASTHWLTYAGKLQRSFTDLFTRKPVEQWRADERESLRIAIKPIAELYEKLK*
Ga0151515_1006623	F014504	N/A	MHDQTRDAAEYDEASYTPDFYSFDDPTAGHAFRMTAYREASEKLLVVLNKTISFLAEHGYSRSKTLWGVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNHGAHAAGH*
Ga0151515_100664	F008495	GGA	LNILIVYHLRLGDIARCLPIAKHFADQGHNVMFECLPEYHGLFEMVDYCKPIYPQNDHSGFHRIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELRSWVLCFPTGYSQDKKIDPRDVIAAAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDAQEVVTINTSTSILASALRKSWVHIADSPKHDFTHPNQRRIERKF*
Ga0151515_1006640	F025459	AGGAGG	MKMTLEFDETERYEHEVACKALDILILVDDIDQELRSALKHESGAFAKMDEDTMEAVRAWIWEQRSQRNIPELK*
Ga0151515_1006643	F011668	N/A	MSAKTIALWMILISFAFLGMALLTSCAGFKNPSVCLKTDYGTFCYELPDIQSLKK*
Ga0151515_1006652	F035667	N/A	VKITGWGFQEIMEELPFAAGLQLLHADDYANGRHSAWANNNAAVDVDALASIEATLAKYGKV*
Ga0151515_1006653	F009267	N/A	MKKNKDNDLEKDDEILRIQAMEDGPKKVNGRTMRPITALTISWMQRNEVFSGEMDSVWKAAAFTFLHSEPMSTIRGVVNDRAIFINAVDSWIEKNMTHHHETAAMSDEMSKAFDLYNSASPASQPGEGSGSPN*
Ga0151515_1006654	F011222	N/A	MDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENAKGQDASQVYRQMTKEGDELEEKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
Ga0151515_1006657	F046247	N/A	MNIKLNSEGWRFDESVGWKLIHNDIDVIFFEETDKVISTQEKLFVGTKEECDAEIARLGLVDVTAQENDNGLDLHADA*