Scaffold Ga0151515_10013

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10013
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 63616
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (79.17%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F007581	Metagenome	348	Y
F010016	Metagenome	309	Y
F012016	Metagenome	284	Y
F029418	Metagenome	188	Y
F031359	Metagenome	182	Y
F033405	Metagenome	177	Y
F043777	Metagenome	155	Y
F046899	Metagenome	150	Y
F080877	Metagenome	114	Y
F088231	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_1001313	F007581	GGAG	MEKITNMLFPVIVSAIAWLLTSMSSIQADLINIKSKMPILITEQGVPTDSPVSADQRAKLKEELKLQIAELSIRVRLLEEHEKTRGYK*
Ga0151515_1001333	F010016	GAG	MGMVMKKTARNDVTGDWMQSKPNSEQFEKNFDLIFRKKKEVLPEYELNRSTGNVQKVDHGDTTNTQE*
Ga0151515_1001339	F046899	N/A	MTDVGVQFNAETNLKATKRKRRIDMSNTSNFSPSARMAIREFESWQMKVFKKNAKKGWRFFNPDAFDRPTPRSAREAWGAPYKQDNFEKNEDRNSKIMFAVVVAILLLLSVI*
Ga0151515_1001340	F033405	GGAG	MNSKKTDEQIIEAVNQYMEKYPNATRNQIVLNATGTAIRIRELDKKGLIKLPKALPKGANTKWNGYFNNTSETNTKRQGMKYNV*
Ga0151515_1001342	F006587	AGGAG	MMDKKYEGTGFIIVGFILGALLTWAIMQSIHVQKKYSMNLKCVQGELYEEIRPNFYVKSHLECFEVRTLAP*
Ga0151515_1001344	F012016	AGGCGG	MQETLKQPYAWSTEEFNVNGDLVWSSITQFRPKELSWIRDLPNKKHYITITPLYKDEANAEKITGIKSYRESTQRLTEAFNGL*
Ga0151515_1001352	F029418	AGGAGG	MTQHQINEEKKRKFEEDIIEVAVAEYYEYVETHNRTRSEKDAKMFYDAMRLGIVRGINFATNQYMQSLKNFEEKKNGDN*
Ga0151515_1001353	F031359	GGAG	MVTTKKEKQYIVEQVVVTGYVIHTNGRKTPFAFNKDDLKPNDLLGIFDGVRRIFK*
Ga0151515_1001354	F080877	GGA	MSDLERDLDPPEPQEPVRIKSWWIGVKWEDGRIEEIALPEAFRQAGSDIEGFLDEVEYEYNRDILEHQAQKYGDPDGDY*
Ga0151515_1001355	F043777	AGG	MKLINGTEMIDNSPNEKAGELAEAIYDDVLFILDIEHKCIQDDEDGNTSNTEYGQDLFNGIYEQCMNYFERETT*
Ga0151515_100139	F088231	AGG	MAKMTIEELIKEFSNEQGFQFGIDIVMKSLRPGALYGLSASGGTFEIVSWDESNELPPPSSQEIRDEYIRHQTIKEFLDSIKNYEELYRKLA*