Scaffold Ga0151515_10012

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10012
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 64129
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008750	Metagenome / Metatranscriptome	328	Y
F012101	Metagenome	283	Y
F065546	Metagenome	127	Y
F071151	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_100121	F065546	AGG	MTTITGTQIDDFQLLTLRQMLKLEIRGMTRSRSPSAYSILKKMGYTGTRESVLAQLDDRRREILGLA*
Ga0151515_1001236	F008750	AGGAG	MRKIRFMELMKEPFKKPTPLEMIAAELSDAHLEKLTAETAVEYAQSIVDYNVTRIARLNLRLDEYKTGDK*
Ga0151515_1001242	F071151	GGAGG	MNCCNANGVCDQGKDCPVRKQRLKEINDAYANGHKDAQLDDPIDDLADTFKALLTMMTAVLGVWIVCLIIWGK*
Ga0151515_1001261	F012101	GAG	MAGVNMAQKNVVAPRLPAATQQYDPALINQLANVLRIYFNQLDNAGPMVASTQRNGTDIIAGLSFFPTGTSTTPSLPTETDLANLRVGDIYYDTSANNVLKVKV*
Ga0151515_1001299	F065546	AGG	MTTITGTQIDDFQLLTLRRMLKLEIRGMTRSRSPSAYSILKKMGYTGTRESVLA