Scaffold Ga0151515_10011

Overview

Basic Information

• Taxon OID: 3300011114
• Scaffold ID: Ga0151515_10011
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 66274
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (85.09%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006890	Metagenome	362	Y
F007581	Metagenome	348	Y
F016267	Metagenome	248	Y
F020864	Metagenome / Metatranscriptome	221	Y
F039984	Metagenome / Metatranscriptome	162	Y
F051928	Metagenome	143	Y
F054678	Metagenome	139	N
F083741	Metagenome	112	Y
F093300	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151515_10011102	F039984	N/A	MTKERKVPVSPAEAYPLGHAKENKDASAYTGFKYPSGGGNDIGVYKQPMPNPNGTMHESIVLPGNGIDKKNMSVGGVSKGNYAEVNPYGVKEMRGYGAATKGRKISGKQG*
Ga0151515_10011103	F020864	AGGAG	MAYKSAADGITKKGKTKGKNLGDSGPTVAIQSGKGSKGASTVTSLSMKKLGRNLARAMNQKKGK*
Ga0151515_10011111	F016267	GGA	MSAEREVIEHGVEIKHIQSDVDSIMEDMEQLKKRLEGIEKTLEEIKGGWKVFIALATIISGIISWMVTHWLGK*
Ga0151515_1001141	F054678	AGAAGG	MVDAKKTIIVENVLVKGYIKHANGKKTLFEFNKQDFTPKAYEKIFQELGDKF*
Ga0151515_1001142	F051928	AGG	MMATKAYTIRKQWRIKLHAKRCQDQDQSDTRYARDAKVLNRAMAIYKIEGRKATW*
Ga0151515_1001157	F083741	GGAG	MNDKEQLEAVYAGMAMMGFLIRGTPLHNIPEESKAMAKRMMEEEVSVGLPPIKRRKKSG*
Ga0151515_1001166	F093300	AGGA	MKRFLVLAEVEMDDKKYADVQSWNVEPTDFIISVLADHGRDRGLLIKMRCMETEYHLLDDVSRSADAIAKDKAYDELGEVVLHNSMCVGGNCEA*
Ga0151515_1001178	F007581	AGGAG	MNMEKITSMLFPVIVSAIAWMISSVTSMQNDLIDIKAKMPILITEQGVPTDSPISAEQRGKLKEELRAQISELNVRIRILEEHDMQRKGK*
Ga0151515_100119	F006890	AGGA	MTPAQKEIFLIVDEFWKLYGFGPTIDDVMRLTGEKGRGNVARKMQILIEIGVCKGVKGRARSIRPAGLRVRNLE*