Scaffold Ga0151517_1801

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1801
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10297
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002135	Metagenome / Metatranscriptome	590	Y
F004279	Metagenome / Metatranscriptome	445	Y
F048985	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_180111	F048985	GAGG	MPSTAQVTVTTTATLLVTANRADQMVYLHAKHQVYVGGPGVTTSTGYLMDNGDKLSMMLSDNESLYAIATSGSGIVQVMVTIN*
Ga0151517_180115	F002135	GAG	MADTRRKRKKINKRVVRKSPEPLTKLEVFYIAKHEMFRAARKAGFTESVALYLMDSPSSMPDWVVGEDGIIPSIPTPEEDED*
Ga0151517_180122	F004279	AGGGGG	MGYVEILNGSGFTLRMENDKESLNPSMDRCVSCNDDR