Scaffold Ga0151517_1740

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1740
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10795
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F007469	Metagenome / Metatranscriptome	350	Y
F094891	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_174014	F094891	GGA	MEHNMKIVEKIFDVQTGEESIVERDETTAEKKIREKRESEIAARQAELEAKIAARQAIADRLGLTADELQVLLG*
Ga0151517_174016	F000468	AGG	MTVWTPDWKLTVAGVDYTDIAIADITHQAGRDDIYSQPNPSYLQISLVALSGQTLPFAINDSLSLEVKNSTGSYVNIFGGDITDLTVEVGSTGSLATVVNYTILAMGSLVKLAKEIYTGTIAQDEDGNQIYDLLSSLLLGSWNDVPSSTTWATYNATTTWANAENQGLGEIDTPGLYTMENRAAEPDTLYNIVSLIANSAFGYIYESPNGDIGYADADHRQTYLTANGYVDLDANHALGQGLSTITRSGDIRNDIYINYGNNYGSQKTASSASSIALYGYKSESINTVLHDATSAQEVADRYIAQRAFPLPVFQSITFPITNPEMDDSDRDNLLTIFMGQPLDIQNLPLQISLGRFQGYVEGWSWSTRFNELFLTINLSPVAFSQVATRWNAVSAAEAWNTLSNTLTWEYATIVA*
Ga0151517_17404	F002162	GGAG	MPKYDYECAGEGLTIVLDLPMDHKIPKCQVCGAEMRRIYTAVPFILRGTGWASKDG*
Ga0151517_17405	F007469	AGGAGG	MGELQIIDGSGVTATFTDAGVKVEPSTTFCDCCNDDRLLHEGDLLRCFNCHTINRIPYPVHGVPDNA*
Ga0151517_17406	F002357	GGAGG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDAEKGYILVQATLWRDATDPSPAVSNIAFGSRETYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMRKVEANPSFKEKLESRQNMYGKPGTKSAQIETILRDSFAADKKPEPVVWSVGDVVAEIGSSTPNEPPACEHGHILKEGISKGGKPYYGYVCKAKQCEAKWAKLTANGKWYFEGGE*