Scaffold Ga0151517_1711

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1711
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11000
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (24.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002317	Metagenome / Metatranscriptome	571	Y
F010026	Metagenome / Metatranscriptome	309	Y
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_171120	F082606	N/A	MSLVVLTAQCSGIVVSTIPTGQKTYKMSPNGRGVRVERPLWKFNVGMPCYVRGWPAYEATIVGKVEDCTWPTYLVQSFDTGATYKISQLYLSKRPIENR*
Ga0151517_171122	F097251	N/A	MIILTDSQLVELTNRIGQIQRIIDSAQVIKATPAQPKTVTEAATPQPVVKKRKARSRRVMLNTAQVVEIKRRLAAGNESAAKIAKDYGVHVTTVNLIKYGKTWKEVQVPA*
Ga0151517_17113	F010026	N/A	MAVKAKTGAKTVQHQPGKPKKTRQGQGQHSLPNHGRKKTRGQGR*
Ga0151517_17119	F002317	N/A	MDGHDDGHVAPAAPNAFSQAVPALLAAAVLGLGGLFIQVAKLDQSVSTVAQDIQELKNDSKERLADLEDRVRQIEMTIGSGK*