NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151517_1610

Scaffold Ga0151517_1610


Overview

Basic Information
Taxon OID3300011113 Open in IMG/M
Scaffold IDGa0151517_1610 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12261
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (51.52%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F000744Metagenome / Metatranscriptome909Y
F002243Metagenome / Metatranscriptome578Y
F013172Metagenome / Metatranscriptome273Y
F032934Metagenome / Metatranscriptome178Y
F055547Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0151517_16101F055547AGGMIGTNWFQKKWGFEDPVLIDELYERLAELEARVKVLEEENVETTNELYRMENSLDARIDILAEHCRTNTDV*
Ga0151517_161022F032934N/AMDKPILIKQFAKRWYLYWADNGRTIASFASEFEAYAARRSMIEYNKKGGLS*
Ga0151517_161023F013172AGGAGGMSYYWTTKLNTATNRRLEKLEREGVTIDTETHSGRQAIGYNYLELAFNESDND*
Ga0151517_161026F000744AGGMYLGTETMTETNVNLNVHEIGVILSALQLLNLRDENQIAREYGSVPALYNKLYTVFEQMDRSGTVLRNDVVPSF*
Ga0151517_161027F002243GGAGMPDFPTLQSKDGTMLVGFYPVATPFGDISEEWCMQILSWKGIDQISKKYLNRVEKAVAIRERLAYDYIITGDNQDLPQQGNPFYGAC*
Ga0151517_16107F000345N/AMMIDDFRPGADDGTRHLSQQNENHPGAFAKLSEWWGSDACKELQKANREAQERAVGKYFMLSEQDKIDMVEAITYLMCKAEREGCSHRGVMDALGIYPAGFWVDHLMDVHNALWTYYHDKKKEQDLKDDLDALDNFVK*
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