Scaffold Ga0151517_1574

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1574
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12812
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F002433	Metagenome / Metatranscriptome	559	Y
F005452	Metagenome / Metatranscriptome	400	N
F005503	Metagenome / Metatranscriptome	398	Y
F010982	Metagenome	296	N
F029109	Metagenome	189	Y
F047681	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_157416	F029109	GGAG	MAFKATKGQGSFRIEVEPYELKNLISTLNSLDKETQGRVRDAAQPLSKRLAGQLMMFGGSSPTPQTKLVLQSMLTPRDRLIRVDLGGSKKVGRPYGGTASKSGKGNKVGRSAAPAGALLWGSEYGSHSGVDRAGRKYSNRFKAPQNRSGYWINDAVDYYTPVVAKEYIAVVQGIINDLRLN*
Ga0151517_157419	F005452	N/A	MTIEADIRTPLQTALSTIAANVYNGIPETMTSPSIILVADSPYLESTLVNGSTTKVKINMLVTGVIGYSSNAAALTNLEDLMISIISTMPAGYVVGNVSSPAVLEVGAGNFLTADLQVSTYYTD*
Ga0151517_157420	F047681	AGAAGG	MPQIVTAAELRSILGVSVSLYSNAYLEQMIESAELTILPLLTGYQSAVTEIFVENSIAYYGTQRVNYFVPGQNVVITGCGVYDATVTVTDDRIAPMVFTSATGQADSTYTIPIIPSGLACIDGATAGDLYSGVAPIKSAILVVAVEVFQSVTAPGNQIMSDAFQPSPFVLGRSLTSRIVGLLGPFLEVETMCL*
Ga0151517_15744	F010982	GGA	MIMVRLSREDEVIAHTAGLARESRYGSNPKFVGNKGNFHNAVVIHSEAVGAEIAVARYFGVEDFEPTINTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPTYYVMGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT*
Ga0151517_15745	F000403	GGA	MSGAIEIINPRTMTCTLMEDGVVLATYKVEQCDKCSKLVKFDEFGYQKGYGNEKIIWFCWECR*
Ga0151517_15747	F005503	GGAG	MTTSEVGLFVLMAIACILWAICSYAVGYKEGHKDGYQRGKTVGRHASSQAVR*
Ga0151517_15748	F002433	N/A	MSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELSPNSGNSLKDQVSRIEQRLDQLILEMALKK*