Scaffold Ga0151517_1484

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1484
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14475
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F016523	Metagenome / Metatranscriptome	246	Y
F036685	Metagenome / Metatranscriptome	169	N
F044371	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_148418	F044371	N/A	MVTMGNSEVNDIYPETGITEHTRAMMGMIDDLFTPNHIKRSKASHLYHLVGELEALRDDLRRMEDPRANFLQLAITELSQLII*
Ga0151517_14844	F001326	GGAG	MAVYSVTQKYLLDNYAVLQLLTPSEIAVGQSITVASVDATFNGTYTVRALPQYLYIGIDSEGDLLYDINVPIANQVLYAKTASDVDRTAATGTITYTQTCTWVTAAQLITYLGVQITDPSDDYTLITQAVSAGNNFAYRRRQEAGYIDSLTTSPGGDASLGTLMYCAALWRSRGSLENTFASFDGMGAAPQQSLTPIVKQLLGIDRPACA*
Ga0151517_14846	F016523	AGGAG	MYTIISPRLGNPGDQFIPKEGVNIDALLDGGLISTDSVKKSSKVKSEPKEQ*
Ga0151517_14848	F036685	AGGAG	MKVKLSIDLGDGKPAREMVTNMLAIVDWERTENRRSADGKGIGFSDMCCWAYTLCKLAGDKVPANWREWVAENPDMTITPINEVADETPFIEGLGGEASAKS*