Basic Information | |
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Taxon OID | 3300011113 Open in IMG/M |
Scaffold ID | Ga0151517_1452 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 15149 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (63.41%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.947421 | Long. (o) | 127.818872 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004208 | Metagenome / Metatranscriptome | 448 | Y |
F009071 | Metagenome / Metatranscriptome | 323 | Y |
F038911 | Metagenome / Metatranscriptome | 165 | Y |
F044304 | Metagenome / Metatranscriptome | 154 | Y |
F054801 | Metagenome | 139 | N |
F055721 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0151517_145215 | F044304 | N/A | MTTLNLTDRQITIISIAITNLYDEIAKSGEGGAMRDDIMELSKYIQQQYQVAQQ* |
Ga0151517_145221 | F009071 | AGGAG | MPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEEECRQYAYDNYTDKERYEMCLMDWEARDWDV* |
Ga0151517_145224 | F054801 | N/A | MTYKVRYTGFGPYKDKLQPNQIFTVKDMLPYAWHENFTFEEVEGEYHTIFFEDVK* |
Ga0151517_145226 | F004208 | AGG | MTYNLNPEAKAFSYTREELFECITKIVAHPYKTITEHDQSRALAIMLVFEDYFSNFLESDNNGSHYVYERDATDFTDFVRFKLGISDYDAVDADEVLK* |
Ga0151517_145227 | F038911 | GAGG | MTVEKVKFVTVTRVIDDRNGIHYLDAVDVNGNHWTAEMDSKQEKWLVYIKGWKKDSQQPLDL* |
Ga0151517_145240 | F055721 | GAG | MSKEEYYKWVEENDTYPEHSHKWIVKTYIDNQMFYRNFGPFETKKEAKEFIENYKKKYTTKGWITRYSIQGLCEVL* |
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