Scaffold Ga0151517_1449

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1449
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15247
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032962	Metagenome / Metatranscriptome	178	Y
F032998	Metagenome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_144912	F032962	GGAG	MPALTVARTGLGATISGTGLVTTQVTRIGNIKIGVDVLNISHLGTQGFEEDRPGDLRKNPDLEVEFNWLGAAVPITTAMVPTSEPYAGIAVTITLPGAGSVQGTAFVKEVEFPSAEKGNIMKGKYVLQFDGATELTFTPA*
Ga0151517_144917	F032998	AGGAG	MANELIGAELRKGSGFCRKGEGFTLVIGETWNYRVKTDQVTSSRYSVLYETPGLPRAGLLYGPLQLICDDVTCEREEKHALYWNVTANFKTGSEQQKQNEEKDNNPATWIPVFKIDSFTTKEKVLAKDRTTPTAKYGVNSAGTPFDQPLVTSTSLCQFSFVQFDSPSLTLKDFLDRNDTVNSSSFDTGREVLAARTMLIEVQEAELGSYAGYQAWRAKYRVTYDPDTHDDKRADIGPFYLDATDGNKRKRYMDDTGMFGVVGALNGTGGKASTPAELSFRVKKEDSLSWIRVR*