Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1420 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1420 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	15884
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (89.19%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

15884

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (89.19%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F006653	Metagenome / Metatranscriptome	367	Y
F007691	Metagenome / Metatranscriptome	346	Y
F013279	Metagenome / Metatranscriptome	272	Y
F016784	Metagenome / Metatranscriptome	244	Y
F018135	Metagenome	236	Y
F040479	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_142013	F003212	GAGG	MKDKWLVTLEIDTYDGDPRYWDWDIIFPNEDDIKIVSSDHKGRVLPTSEGESE*
Ga0151517_142015	F000821	GAGG	MNEEYLKAKFDLCINQAEKDLKQEEIARAIANLRRANSALSQLFGFEEEAENE*
Ga0151517_142017	F003863	GGAGG	MESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIISTDSRLTVGIHTRANNTPAVADPADAGADEGNNGGKA*
Ga0151517_142018	F040479	GGA	VNPASTTLLAQETLRVNQLAQLSELLNSLESVVESLNYKSFTLYDTLNTAIEAVSVALNDTQIESAGTDVID*
Ga0151517_142019	F013279	AGGA	MQYDYRCPDCNSVLTIERSIHENPRDPSCFDCHVTMVRKWDSPAITFKGKGFYSNGG*
Ga0151517_142026	F006653	AGGAGG	MSDEQMSHKKEKPELTNKYRDNLKIDVLRADVDALKVDLTNFVGALLQSGIVELVKDETGQVVYKINKVVLVDESVQQD*
Ga0151517_142030	F016784	GGTGG	MEFNTYDYVAPEFKDVIATGEYAAHYWFEQGWKACRLAFLLHKQAEEAGAFRV*
Ga0151517_14206	F018135	AGG	MTVERVRHSGAYVLSEFVGEGAGEYLFTRTYYGYTLKQAKAQFKIALEGEGK*
Ga0151517_14207	F007691	GAGG	MDTIEQLINEIYEDNYSHLEFDEAMGGEGCTCPIHTTLNTIVKYRDKGEGK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1420

Overview

Ecosystem & Geography

Associated Families

Sequences