Scaffold Ga0151517

Basic Information
Taxon OID	3300011113 Open in IMG/M
Scaffold ID	Ga0151517_1364 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011113 Open in IMG/M

Scaffold ID

Ga0151517_1364 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	17335
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (12.12%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

17335

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (12.12%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.947421	Long. (^o)	127.818872	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.947421

Long. (^o)

127.818872

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F003459	Metagenome	485	N
F005845	Metagenome / Metatranscriptome	388	Y
F007748	Metagenome / Metatranscriptome	345	N
F011581	Metagenome / Metatranscriptome	289	N
F030688	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_13641	F030688	N/A	MAISVLSGSPQAATPVYNKMLFKVSGSLTSGTNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNIVFAGNLEQLELADWSGGVYFPSGTIANNITRILTTPTTRTVYSDNYGWLAIGQFGGAVGKAYIQYWQAGASGFSRQFEVTPTGLSGSNIVRFGVGP
Ga0151517_136417	F005845	N/A	MKPTPTDFRRWQIHIRKECVNCSRPDRSETISPWRVNWVLLGHVLNAKKA*
Ga0151517_136425	F003459	N/A	MNQELVTIPKSDISKQDIADIAANLIHRIEEGEVNPVAAHVRLKAVIKALEQVLKATEQTVWDEAEKNGKTFSAFGAEIQLKEGAITPDYSHDQVWSDLQASMKAREEQLKMAFRNAGKMTVIDESTGEVVPVCPAKGTKPSIAVTFKTT*
Ga0151517_136430	F011581	AGG	MTYHSTRPAKALTNALERLMISISTQELEENHVLLCEYRRACDLLGYDPAKARWTNVEAVNASGLPNDEPHTVDYYPLLNPEE*
Ga0151517_136433	F007748	N/A	INRMDAGQQVQQAYRSSQGVNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQQTAEAQQKELAQLRNEIVSLRERIECLENTIQVLEAENATLRQS*
Ga0151517_13644	F000557	N/A	MKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPATSLTKRYKAIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAGWFGWFPKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHLTKKAQDQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151517_1364

Overview

Ecosystem & Geography

Associated Families

Sequences