Scaffold Ga0151517_1355

Overview

Basic Information

• Taxon OID: 3300011113
• Scaffold ID: Ga0151517_1355
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Sep
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17722
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (61.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.947421
  • Long. (^o): 127.818872
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001848	Metagenome / Metatranscriptome	626	Y
F002037	Metagenome / Metatranscriptome	600	Y
F011384	Metagenome / Metatranscriptome	291	Y
F071000	Metagenome	122	Y
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151517_135513	F001848	N/A	MILHYIPKDQLRTHWEFIKHGLQIAINKCSPEWIIEDIYCDCYENRSMAFLALKDNKPYGFTILQPIGNSLHIWVSWSSINDEELQNEAMKEIQAIARQGGKTRVTFTSPRRAWDKRAIQMGFKPSTWEYILEK*
Ga0151517_135522	F071000	N/A	MIFLNILNFIGLSILKFIVVGMLLLVMGIGLVFIALMDYLTIFLKYINSYVD*
Ga0151517_135526	F093530	N/A	VSNAMRNAYASHTDFGFLRGVILENPKAMPSNIDMVFERRGNFLIGEWKRENEDISLGQKILLKALADQDKFTVLVINGYSDDTGTEVNNFYKVTQNKLAILGNGIEGLKDYIDAWYQSSIGVSSP*
Ga0151517_135527	F002037	N/A	MNKTYWVFIVVMAALAIFWTEETFSQTTTILAPDGSVTVCQVYNGTVICV*
Ga0151517_135529	F011384	GGAG	MYTKLDDQRQAKFIIGYITAHPGCSIKEIVQECVTNRTRLKYLESQGYFTLPKWTYNNTLDKRFKNRNYVSVTVGREYGKWEEQKRY*